Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1002849 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9506
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9506

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F024119	Metagenome / Metatranscriptome	207	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F057213	Metagenome / Metatranscriptome	136	Y
F064722	Metagenome	128	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10028491	F064722	N/A	ALDSDKYIVRHYNYEQMRSGNRQFIEEQKKLLSPLKFAQDYLCSWESVADQFFYTFDKHKHTTDNIVDRGGDLYHFADFNKRVMCAIVAQVGKDKLEVLKSYAIPDCSTEGIAEAIRIDFPKRRIYSVIDMSGTQVNRDTTSPFGITDRIILEKYGFTIVNSRKSNPLISDTDNTVNAFINRGGLFVKSDDKLLLEALSTYHFEDGSRKRLVKYTEQKYAHIDGLGDCLRYGIHHLFPITHDQTIKEFVGMDQRYMQIPGQEYMPESPLYPGGPTWEEIVNGDENVPDHMVY*
Ga0114363_100284912	F003807	AGG	MTDQWLQTNEEKLRSLIADEAKLLPMLNSMEQTIRQMKAKQAFRLALLNQLLEEYYDKYSGN*
Ga0114363_100284914	F040626	GAG	MVSILQVDGIGKRYGLLPSEVLARGNTFDLYIMDAALTFENYHNQKAANGGKAPLPDYTEEELMKIMKRQK*
Ga0114363_10028494	F026558	AGGA	MNAQDLIHKNPIYNAIYEQMLGYQYAYLGGYVFKTYVRKKRPSEDSNLYLDLVQNTVAQPICRYIVDTINDVLFEPGVKRELKFCTPTGAYINPDNTEWAQLFLLDADLNNRTLDGFMEQVGDLTSIYGHCWVFVDMPVQGDANYGRPYVVAVNPLNVWNWEWEWFGGKPMIKHVKILEAEDKDNWYLKCYHLGTDEYPSYWVSYKVGKNVAKGDVEEIGRGEYPPGMAIPGFIVYGRRDPRTIDIGVSDIDSASDAQREHYKLECEAYTSIQFAKTIIRADKGVAIPVHAGAIVRASQGQVETIPVDTGDVDKVTSRQREILESIEGLTGLGGLRNTKNQLASGVAIIEERKQLHRLAKSKARLMEVAEELIFTFAARFMNMRWAGEVHYNTDYEAHDTNYRLALMGQAKNLVQNNPIIDNLIAKEIIGMLAPAEQIPQYEQAYINTITDTQVKDLMTKDNEQVMSRDLGDQIVTPEQFGETEGIYGDDTEYDSAGDEGVGYNDEGIGTPVTYTGQSYYTNQAIASQLTGINTGR*
Ga0114363_10028495	F057213	GAG	MLENNLDGNATAPDATQDNVATDGKVNAGAIRKSTTSSILNALSQASGQNFESVEAAIGYIARTASQSTGGNAQPVELEPAIEPRMGRDVGNDTTDLRDQFMKLQRDLAQKERALRMKELDTEILRNMGDRFDNDLQDYALQKIKSNLQFKRDGSFAIVNSKGQERYGMDGNPLTIKGLIEEVAQGNPKLLKQSNLSNGSGLRPGQSNFAGAPLDQIPDYSKDPAAFNAWAAKMGLGKGVGLKATNVSATVSTASRKIV*
Ga0114363_10028496	F024119	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSGSGDGFGPSPLAVEQNPSLGQGSITATPAVAATAFDKLASNDELFALVA*
Ga0114363_10028499	F002260	AGGA	MSVPYQRISNATVQDIIFYDPAAERRAAQMQVNWDDYFHVGSQEILYQLEFGWWPKYCDTVLGATYYTNLPNGALISSFNPSLLIKNDQTLVRLDTFMAVKIFYESIVSDVSNVNDVDRANYDHALRRYQFEWEKALQLMNFYDLNQDAPNGPTTKLEENWTSDVDYFNGDRRYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1002849

Overview

Ecosystem & Geography

Associated Families

Sequences