NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1006501

Scaffold Ga0114363_1006501


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1006501 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5843
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012200Metagenome / Metatranscriptome282Y
F032942Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10065016F032942GGAMTTIAAKASTGEIAADSMVSGDDSFYLVQKLRVGKNSIYGACGDWDKCLKMLQVLESGGDLDSDTDVTVLEIRSDGLWIYEGTIIPARIKNDFWAIGTGANFAIAGMHLGLSPAEAVKLACQYDTSSHEPVDEMRLGGVRGRKKSIG*
Ga0114363_10065018F012200AGGMSDPIETTRAALGSIKEAVKVGREIKETAREVNTFLDEEAKARVAWKRKQQQMMRRGDMVWMEAIDEYRIIRQIREAEQAMYREVEREFGRSAVSEVKSLINQLRKDHRELNDEFYRNRMQARREWGGILLISAIVYGILKATGAL*
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