Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1007105 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6252
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6252

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100710513	F001731	N/A	MSIFNPIWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNLEIINLDQSNVSIAINQAITIELQDSTNTFVPIFGGSIVEVGISVAEVGSVDYAQRINIIALGALARLPKALTEGVLSDDFDGDQIFTILSQVLFSSWEEVPGALTWATYDPTIQWQDAENTGLGDIDRPGNYELENRGSSTTDVYSLVSALATSGLGYIFESPTGQIGYADSTHRTNYLAANGYVDLTANHALASGLSIQSRAGDVRNTITLRYGNTSNLEVSAVDSESVALYGQLAQIFSTTIKHQADAQDQADFYLELRAYPRFNFSNITFELTNPELDDIDRDALINVFMGMPVNIADLPLNMNSGDYLGFVEGWTFSARYNQISISMIVSPVSFSLQAMRWNDVPVVEQWNTINPTLDWINATIVA*
Ga0114363_10071053	F003182	GGAG	MHILQFDCSICKKLYGKAKQRHGLKKGAELTAHEWFAQCMGCGTFGIKLVDDDRIGELSDANL*
Ga0114363_10071054	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAELVVAKRLGYEYTPGITWDKSKADVGQHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI*
Ga0114363_10071055	F000403	GGAG	MSEYVEIIYPQEMKARLMCNGEIIEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
Ga0114363_10071056	F012452	AGAAGG	MAAFLENYEGNKERTDRWLKTFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQEEKEPAGIDYAFGYREAFNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCEPLWYVFTSRGKWEPQV*
Ga0114363_10071057	F009883	GGAG	MDELSIVVMCLIAGAFWAVMSYSVGFKEGQRQGYTRGRAVSRHISQLNEKVDN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1007105

Overview

Ecosystem & Geography

Associated Families

Sequences