NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1021840

Scaffold Ga0114363_1021840


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1021840 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4846
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F016922Metagenome243Y
F057879Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0114363_102184010F016922N/AMSAIRINSRAIQCVADAEGATEYVVRYAGRDFIVTAHSRYDAEEAAEYYRPETTDESQPDLIK*
Ga0114363_10218403F009945GAGMSALTTFKRTHGVATHRLTGAGHRYPWMAFFAEIWMKDGTRRAFTELAHEYSMLELRRRDKVADADTELEACKLLAKRNRIPWPA*
Ga0114363_10218407F057879GGAMTEPSTEQTDPKLAVRPEPVPAGGEQESESPFAGAAQVPPWEL*
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