Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1029962 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6197
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6197

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004430	Metagenome / Metatranscriptome	438	Y
F012648	Metagenome / Metatranscriptome	278	Y
F013758	Metagenome	268	Y
F025011	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_102996210	F004430	GGA	MATGAEVLTMLIPTGGWAISGNDFTGITFIEAKPITKAAFEAGFAQYDAWKADQDAKKASDKSALLERLGITADEAALLLS*
Ga0114363_10299622	F025011	N/A	VLGVSVALYDNNYLDEVINTAEAVILPMLVANVSAVNAYKLEANVATYYTARGHYFVTGQSIVVAGLPAPFSATVTVVNTNTTLDASLGNFYFTAAITNADVTLRPILTNRVSTLLMPYLDVETVCQ*
Ga0114363_10299625	F012648	GGAG	MQQNITITYQDGSEAEYTIRPPDYARWEMTTKKVISQFGGMWDILYVAHLAYKRDAGSKTTKPFEAWMESVSDVEVGDGDPKATSAEVSAD*
Ga0114363_10299628	F013758	GGCGG	MSAYTPVYKVTSGRTDVNSQPVAGYCQVQLINLNNSAYDFTVGTGITVEVTDSTATFVPIFGGYISDFTTTVNAVGTLAATTVVQITALGALSKLTKFIDPGVLSSDQDGDQIYDLLDNYLLGEWQDVPAAQTWATYDATETWAEALNLGLGEIDRPGDFLMIARTSNETDLYSLATEIATSALGLLYEDANGNIGYADSTHRQDYLAAEGYTTLDANHANGAGLSVTTRVGDIRNKFAITYGTSGQHTYTAEDAQSIIDYGLYAQSFTSRIKDAPDAELYADRLIALRAKPYAKFQNITFELGNPEIDDSDRDALINIFTGLPVWIQNLPPNISEGSFEGYVEGWTFNATYNNLTVTFNASPVNFSQVAVKWESVNPAEAWNTLSSTLTWLDAIGAVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1029962

Overview

Ecosystem & Geography

Associated Families

Sequences