NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1040652

Scaffold Ga0114363_1040652


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1040652 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1902
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F039989Metagenome162Y
F062553Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10406523F039989GGAGGVRFLLAFSVVLVGCVATLPGDNGVTADLACETARMVVQLRHEIAPSPASDKCENCDGTGKIGDGRIVMPCPICKGTGRK*
Ga0114363_10406524F062553AGGAMTLSDLQTHVWDRLPTLQRTVAGRRIVARIVKSAVRGWPLPVLEQCNADETQVVAKHYTKQIERAARHEFGMGIILTLVLGALVQEVVKLLVQWWLDRQENRTQMRLLMREARNHD*
Ga0114363_10406525F003377GAGGMTEAAKETITGIMERWGFPVLVALAAGYILRNDVLLPLVEEHRSFVKQLGETQREISQAVAEQTKLLYALQPKAAK
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