Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1040910 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1894 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020909 | Metagenome | 221 | Y |
F024097 | Metagenome / Metatranscriptome | 207 | N |
F096878 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114363_10409103 | F020909 | GGA | MITKRGKKVRAIAIAFGIILIWQVASNLWWVGIDSPNAEFLGWCWGSMSECVVL* |
Ga0114363_10409107 | F096878 | GGTGG | LINRDPLFSVHNSLNGDLAIYLEERDAALDLVEDVLAAVPMAHLESIESLLITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPQTVKLELVK* |
Ga0114363_10409108 | F024097 | GGAG | VANPNGRKGALFETSVMKWLRERGVSAERLSKAGSADEGDVVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYASARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE* |
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