Scaffold Ga0114364

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1002579 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10259
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (21.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10259

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (21.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100257915	F070109	AGGA	LLKLKAERDYLKAQVVLLSKSDSIASFVIKDQAKTIDAYSVANEQKAQQLVKAQQELNKEAARKESWRSAALIGIPISFVGGIIFTILF*
Ga0114364_100257916	F077297	N/A	MTQQAKNQISGAVVIIIAVAICMFMQLMYIRIKDDEKALQGYQRRAERATHVIDSLEATNVQRMQEIAQLNMQIENNNKRYEANISAIDSLDRNGLKRAMHNLLSSLAGERYPGQSND*
Ga0114364_100257917	F047677	N/A	MKWLKSVFSNEGDASSKRVASILALLVCINLSYIGTFTEYKTPEYMYDGLLILAGGGLGLTVIESIFDKKKSNDTTSQESN*
Ga0114364_100257918	F084221	N/A	MSNNQQQIAEGVTGTVSSILLSVPAWMLDVEFALKIFCLLLSAAASIFTIYKMRKKR*
Ga0114364_10025794	F072341	N/A	MTKELAASVQQSFSRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQSTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPEAQPKHVEPTDPLNVLHADVERWNAGKETWVEISAPYNCQRLFKSGIYKKSMWAPEVWARFEDIAKQKVEGKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINKGQND*
Ga0114364_10025797	F066778	GAG	MRAGAHTFKITPMNYSREPNWDKLKPTIDWDEQEEKLADKLNKYINKNNTVMNQGIVKSQKFVREWNGPSGTIYYFDLVVESNNGLNEVGQIGVKDMKSPKIAVGATLHYTVEERTGPTGKKSTNFKMQNPMQYPGTTAAPSGAVNSSSNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGESVIETKLDLTNESSEDEMPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114364_1002579

Overview

Ecosystem & Geography

Associated Families

Sequences