Scaffold Ga0114364

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1003596 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8399
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

8399

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100359610	F012670	AGG	MKTPHDADVLFGEIRPEGSILTDAEKLEYKKQYQKMKRAEKKAMALSTGEKLPKEPKIPLPTGRPKSIVNRVTEYGALFNKLNEERITKGLAPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0114364_100359611	F001915	AGG	MEWTLAHPLHDVDDIVELADSVFGAETDGILTRDRGIFRKNVTVTATVQLFDKGKEFLAVCRHQDILLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVRLINEMIDQHILWAHSWGIPVICSTSIRDEHDGFMRIHKKRGFRVNGSYAYIRTEDGMKGLV*
Ga0114364_10035963	F003521	AGGA	MKSLVYRIREYFNRRTKSVDSSKGADVHRKTLAIENGECASRLIKNEDFALLFNLYRFNLLERLEDCRTDPERIENAFNVAGVRDFIGFIEKTEYLGKVAQKSNT*
Ga0114364_10035964	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSAQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMATEKGLTVKRQNMRKIDVDLEGVMQEMMNPDDDQGTVQEEVNEAIAANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPAKHIYEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPTDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGAPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFSQAMMGLDPSVPELFAKLRRPFEDTLRVLGVKDVDAYLPTLEEAAKIMKAQSEKGPSAEQQKLQSETDLNKAKIEDTMANTAFTQKKAEDIDTDNMFEALAAKRGKLHSVQVD
Ga0114364_10035966	F006264	N/A	MEDHSIIFRQKLSAQAEACARKTLEWLQKDLQGDRTLHPEDVYYLASAAELLLNMRDAYGKK*
Ga0114364_10035967	F001059	AGG	MASYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKIPADFQTDLNPYIDRKELIPVDEMRKVPPRPADLPDPSSAVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERINKFGQKQPEKYSWLDPRTEEIMLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNLMNIAEKNVTNPWA*
Ga0114364_10035968	F040590	N/A	MSYGKVISGGKQMTNGLTKGINNKLKSFDEGHKRSQTLATAVGKAFNQNPLSDQHLNNINVAAAKKFTTPKLPTNV*
Ga0114364_10035969	F099270	AGG	MSTNFLYAQAPNRTGNVSKHTVSKSGGATNVCGPKHGVSGPTGQQGAPKASGDITGRHQKVQVSTHADYCGSCKNDGYMNKSVKNYLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114364_1003596

Overview

Ecosystem & Geography

Associated Families

Sequences