NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1005358

Scaffold Ga0114364_1005358


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1005358 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6531
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F005087Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_10053581F004695N/AVITKCLMPNGKINFEFERFSESDEPGARQAAKMALHFLNSKNDSYQFVRDWAQDSLLHKCGVVMVSPVREQITQYKEVEGTKDNLRSFEIMATEKGLTAKRQQMRRIDVDLQGVAQETMMPDETGMPTEPSPEEMNDAIKAHTIYRAKYKLTGYSTNIQVKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKAQYPYIDLEKFSDHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTAWLRRDIDNDGDEETIEICYSGSYILYVKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPTKHIYEFKAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCATGLKDLIYIVWKTMIQYGDDYNMQQLAEAMLPGAGFLDAKSMENFDFIDRNMINIDLALGFLSDENRLTRQQLITPAQAQFAGLIAQLDPSVPELFQKVRRPFEDTLYALGVKNCDAYLPTMEEAAKLIEAKSSKGPGMAEQELQSKVGLNQAKTKESETVAALNLKKAEDIEMDNFFEMEAMKAGKLTAVQVD*
Ga0114364_10053582F003521AGGAMKSLVKNIRGYFNRRTKATDGYKEAHVERRTLVIQNGEAASRLMLNEDFALMFNLYRFSMLERLETASSDEERIGNAYYVAGVRDFIDFVEKSEYLAKMALKKVAT*
Ga0114364_10053585F000857GGAMELNLNNEEAKVNEDYYTKGNLEAGVDGVLRRNDKLYNEVKSGTWSQTFKTKNLDYKVGAEDGARYVQYTQHNVEAIKQYCKERREFYKAIGTTDNPFFAGTFEAMNLPKAIAHSICSTYFNNRPWELVKTDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114364_10053586F005087AGGAMALFIQSANSLVSRVAQWVGAIPSSIGINATAYNSSTGVITTSANPTSLLIVGDFIGNTAIGPFTPVIAISSTTITVSDPDYVWNGATYPTAILKLPTQSSLEVLQCIQLCELKMRTAELPALRSNPYPDNGDFITTDTNGMGPIPLDMNWPILFFQDTPNNQVEPGTPAASYGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGANVKIKAYYQRIFPFLYSATGDPLNPLVQNNAALASFPEGYLYGTLESYYDKNKNTSEAQKWAVRFEEAYGLIADQNFKDKWRGGDQHLTSEFQPRDYRYSFK*
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