Basic Information | |
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Taxon OID | 3300008267 Open in IMG/M |
Scaffold ID | Ga0114364_1009933 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9698 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (13.79%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F076942 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114364_100993320 | F000716 | N/A | MKKMEKLKQNVTDYQLQGGKTYIKYESDGYSQYQNYLYKRALYGLDALKQEELASMCSKKKQRIINVYKRAQTVLNIAKQQATIHYTNLLFKTLFPKSPLTDSLIECSEIDEKFKNTLTFKDLNISKQQIVSIFISEGILPKNFLSLQESPNQLPRLKHENKA* |
Ga0114364_100993321 | F076942 | N/A | MDSKVIVLADEATGAVINVSENNPEYGYVKLQQVRNVIDDNGFLRRKPVNALLPGTVEDLKMLNLFSGQGLTGKIVIEESLEPFNSKTPERDLKIAGSTGIVCTWNGLPIYRRTKFTFDSAVEDTYQKHDNVDELRAAYAVSAGKSQAIKPNQDFSIEG* |
Ga0114364_100993323 | F048248 | AGAAG | MNISINYDDTDVAKALGKIIKDANSEEFIKLLTPMICTSHQATQHFFKLMLGNKLPELISNGTLCKITVSNLGYGSNKEGIRSLFADSEDKVIVTVKEFRGFHEYSQYHIEYTDVLDNGSTKKDTTYVQAKDLEVIEDL* |
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