Scaffold Ga0114364_1011148

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114364_1011148

Scaffold Ga0114364_1011148

Overview

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1011148 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4103
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F020664	Metagenome	222	Y
F078405	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10111481	F020664	N/A	GHLFKLTESERHIIKTIGGGNYHEGVRICIMWGAHFYNLGLNTEMDLKHIGLVTVSSTDNYPHE*
Ga0114364_10111486	F011580	GGCGG	MTSEGLTMTQTQALTKALILALIAPSDEKANQASDLAESIAKGLDFAQVEQCKADALAMTEGA*
Ga0114364_10111488	F078405	AGGAG	MKQFEYEMRNKRTGRIEHARATAKTKEIARAQIVLMYGTQFDVMGLFSDINPPHYILGEIDCSEFPETDTAWLFNQANEIEAVTA*

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