NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1013704

Scaffold Ga0114364_1013704


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1013704 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4122
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F019762Metagenome / Metatranscriptome228Y
F024559Metagenome / Metatranscriptome205Y
F033308Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_101370410F033308AGGAGMTTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGTVPFDLYASKGIATFTVWAESVQDAEHQVSQFLERDEDE*
Ga0114364_10137042F019762AGGAGMELHELVKDTYKEMVIKEHEGFRVRVAKHEVISPKGLFSLDIIQESLKEGKVVDSQTYNFFMTKEELQSLASGLTA*
Ga0114364_10137044F024559GGAGGMITSVIKLILGITLLIAVMVFGPLLGIWSLNTLFPVLTIPYTWQTWAAFFLLFGGLTGLRFGSKK*
Ga0114364_10137049F002977GGAGMKMQIPAEGIMKTNDWGDSKVYRIACNCGDENHNHNMWIEADEHDIIVTIYTTGKTNFWSKTRWYHIWTLLTKGYIDTESSVHLNKQQALNYAETLKSSITDVETFRSERKEKSAVTKLAEQGDCA*
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