NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1014169

Scaffold Ga0114364_1014169


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1014169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5402
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F006503Metagenome / Metatranscriptome371N
F009318Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_101416912F009318N/AMRFLLLLLLTGCTNDRPWKVIEVRAKGNACEYVLSRSNGFGPQVKTLTDSCGKYRLFETIPNRI*
Ga0114364_10141697F006503N/AMDLQMTNDQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAETNQNTGTIPLSNAPANPE*
Ga0114364_10141698F001345N/AVNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELGKDYDTLLDDLWAIAQSEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGLSHPD*
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