NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1014667

Scaffold Ga0114364_1014667


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1014667 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8166
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y
F042864Metagenome157Y
F105180Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_101466710F001923N/AMSASPIDPDSITPQVKDGVVAGILGGLAMVARLLLSTEPVSFGWVVRRVLAAAITAALVGYAIQDHIQSPGLRMGVVGAAGYAAPECLDYLMKYIKARGEKEVAAVVGKPKKPHAKSKAKGKRGR*
Ga0114364_101466711F003583AGAAGMQKAKPRESGDANLLLAVCLLTAFAGVSAFASAYIAGYVLDQLQSTDALVMIVTDAGLKSDSKDLESNMSAATLALKSVRDLGWALAVGCLGVGVAVFVRSRRQKA*
Ga0114364_101466713F014261N/AMKALITASFLIIFGWLAVVTFFGPELYRAINGPEPVKAKVIRRAR*
Ga0114364_101466714F042864N/AMSTNIKPKATLVSDKAMVELLKRKVTSFRETASLKDKDGYVRGIGSYALYGVDHTLGQIVVLASEPTAGDFNQYVTAKAKAEVCARYDQVVEYRDAGSHSSPKVTILCWTLA*
Ga0114364_10146677F105180N/AMITSFLTGLVLGVIAGLLISRKNRSKLEAAEAKGKTILDALKGK*
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