NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1036272

Scaffold Ga0114364_1036272


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1036272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1881
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F036695Metagenome169N
F049442Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0114364_10362721F036695N/AMEMTSTDKAILGLLNNPKIIPPNDIVHKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETIRTKILKPLGLLNKISWGVLIVIDASGNRIIEHSMIKN*
Ga0114364_10362723F026552N/AMDIPKVIEKLMNRDSFLNLLDNDIIEKFEVSASPFESKILVVKMFLNATKDELKGTGESTPPLSQWELRGKLWKSYNLDPAWWQSSIIPNKILKPLVGKDYFLKILIFVLDKNGAHLLTEN*
Ga0114364_10362724F049442N/AMNKENLEQGLTKLLKTFFTKKYDKDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPLIELYNLARELFGNIIGSKNWIDIEFGKYPL*
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