NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114252_100003

Scaffold Ga0114252_100003


Overview

Basic Information
Taxon OID3300008274 Open in IMG/M
Scaffold IDGa0114252_100003 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 764042746 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)234424
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)197 (87.95%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080166Metagenome115N
F089057Metagenome109N
F092229Metagenome107N
F092232Metagenome107N
F095629Metagenome105N
F095631Metagenome105N
F099452Metagenome103N
F099453Metagenome103N
F103435Metagenome101N
F105379Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0114252_10000310F105379AGGAGGMVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHRPVVSVFNWDAEYVKACMNSLREYQVDDNIIARTDEFHNTEYYNELMAGSASTGACRISVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0114252_100003115F103435N/AMKFVFCTEPIYQYYRSYLYADDKDKLDKQLMVEYGDYKDFWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSQDFETIFSEVLFNQSEVEFYEFYKAIYRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQVWYPFDMNTYTNALE*
Ga0114252_100003123F089057N/AVVHPIKFGCTIYIVLEANMTNIIPLIAKKYNRKGDTSGALKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLGNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMDESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0114252_100003164F099452AGAAGGMDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNVFNLYKDIINLDDVSLLAELRHTEWYRDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLKDAEHYDFEGVSEVDSYDLFNTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*
Ga0114252_100003210F092232GGAGGMNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACAKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKTFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTIEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0114252_10000336F092229AGGAGMNKEYRFKHIPEVVLRNVKFIRENNINIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADVDIISSHRVLTDPQVNAVKSAEFTYDLLMAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTSSNPSGYILNYKLELVKENK*
Ga0114252_1000034F095629N/AMEVIKMRELIICVCLLGCFGVANADAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIECLEKLLAEKEGK*
Ga0114252_10000357F099453N/AMLRRKDMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVIYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRSYINSVNLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0114252_10000360F080166N/AMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR*
Ga0114252_10000387F095631GGAGGMASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVQNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSDRDTYFGDISIMQNIQSDIGLVHKDDPHDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
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