Scaffold Ga0115362_100037963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115362_100037963

Scaffold Ga0115362_100037963

Overview

Basic Information
Taxon OID	3300008416 Open in IMG/M
Scaffold ID	Ga0115362_100037963 Open in IMG/M
Source Dataset Name	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	820
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → Candidatus Scalindua japonica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	27.4	Long. (^o)	-93.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087386	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115362_1000379632	F087386	AGG	MGLLCLNKTKIMTKDELFEKYSIDKSHDVWDNGVDNWMSVEVYRIMHDGNLPPQDDLSVMWVCDFLDKQKDMDWWAKNVMSKPNWGSLYLTAKRMVYSFAHQILDELKKRNNEP*

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