Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1002059 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114876_1002059 Open in IMG/M

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14438
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14438

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F015330	Metagenome / Metatranscriptome	255	Y
F027490	Metagenome / Metatranscriptome	194	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10020591	F001915	AGG	MWSLAHPLYDIDDMVEMSDSIYGAEIDGVLTRDRAVFRHRLTVATTEQIFNKGREFIAVRRDLEDKLLGFCWFDRGGYTTYSNEEISNAKFHHLDLRLPLRTRVRMINEMIDQHILWAHTWGVPVVCSTSIRGEHDGFMKIHQKRGFTVNGSYAWIRTEKGIACLK*
Ga0114876_100205911	F004695	GAGG	MLDKQNIVVESLESPPGNKGIEYKVAHEAYLKMVDYLRLTQAKNTLNRMTDYHYLNIPVSNSTEPIRGIDYIAPVVTPGIDYSTAVITKGLMPDGEVNFEFQKFNEADVGSMQAADMVKYFINSKNDAYQIIRDWTQDALLHKNGIVMISPVREPITQYKEVEGTKDQLRSFEIMAADKGLTTKRQQMRRIDVNLEGVMQETMMPDETGASVDMEDSIKANTVYRAKYKMTGYSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYQPMTIHEAKQQYPYIELESFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTCWMRRDVDGDGEEETVEICFSGSYILYIKEVDFIPLASMCPKPIVGNFFGYSQGERLVPLQEYKTAINRAEIAFALQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPGKHVFEFAPMQGNLAYIQDAMDRFDADKMAMLGMTNPNDTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMIKNCAIGLKDAIYIVWKTMIQYSDDYNIQQLANACMEGQDFLDAKSMENYDFIDRRMINIDMALGFLSEENRLTRQQLIIQAQTAFAQALTQMSPEVPELFAKLRRPYEDTLYALGVKHCDAYLPTFDEAAKIVQAKAAQGPSPEQQETQSKVDLNKSKVEETAAKTALLYKQAEDIDMDNMFEGIAAKRGKLSAVQID*
Ga0114876_100205912	F003521	N/A	MAMNSIVTKIREHFNRRTKGIDAQKGGNPEQRTLVIQNGEAASKLLRSEDFALMFNLYRFDMLSRLEDSKDDSERIENAYYVAGVRDFITFVEKSEFLAKVANKNVETLTKKE*
Ga0114876_100205915	F000857	AGGAG	MELNFKDEDVKVNEDYYLKGNLESGIEGVLRKNDQLFNEVKSGTWSQTFQTANLNYKVGAQDGARYVQYEQKNIEAVKQFCKERREFHAIHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQEKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114876_10020592	F015330	AGG	MFEMRPEGSKVTDFRKNKGGRPKSIVNKVTEYGAHFNKLNEERLSMGLPPLKTAMDVLIEAMQSDELDIKEKSRIAEKLATFESSRAPIISIEHVQNITRDEEVDADQALKDFMESLKKV
Ga0114876_10020595	F027490	GAGG	MYGKVISGGAAMRKGLTKGINDKLKGHAAENERRQTVATAVENAYKVLTVSSQHTNNVRGGKFTKPSVPSKV*
Ga0114876_10020598	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEDQYHAARNALEGKKVPSEFLTDENPYVDRRELIPEDELRIMPARSEDLPSEDSQVHYFGATNMPHPDDPQSDKKVAIDFKKYENGVITFQIVAPVEKVAVGSRLNKYGQVQPEKYTWLDPRTPETVLRRADGTLTKEGRGLYTYCVGEKGSGIWPLIDKEVVAIAQKNIANPWA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1002059

Overview

Ecosystem & Geography

Associated Families

Sequences