Basic Information | |
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Taxon OID | 3300008448 Open in IMG/M |
Scaffold ID | Ga0114876_1003070 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11379 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004432 | Metagenome / Metatranscriptome | 438 | Y |
F009393 | Metagenome / Metatranscriptome | 318 | Y |
F050321 | Metagenome / Metatranscriptome | 145 | Y |
F093537 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114876_100307018 | F093537 | GGAGG | MATAKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA* |
Ga0114876_10030705 | F009393 | GGAG | MSGNSQIAFNPIGNTVVVAAAGTAPTGVQAPVFEKFNPQNAGQYRFVNAGSNTVFLGTGPTAALAQAAAVAPTAGSPTAAIVLVPGAVEILRFNIDTFFSGLASGATTVYVTPGQGL* |
Ga0114876_10030707 | F050321 | GGTGG | MEQLGNVGRNRRQRRTTVKGAVLLCEVSGEGKKMITLNKWYPLVQPTHTARELAFDKAVEKVQEEYRYAMECLKQVRKTEDLELELYDKRARQNTIELGSFENRRRFQIFV* |
Ga0114876_10030708 | F004432 | GAG | MVTAKKASAKTPAKAPAKVAPVKRRTPRPKVEVITSAPAPKPVEPPKTDAIGRVTDLIKWVDSPFKLFTVILLSFLAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVDPAKSLLKDVDGLIVLVHKANLATNSRTTVLAMNADGSREKKVEGTITSLFNASSDRNAAMVAMLNNEVICEEFNPSSKVGEWGSKQGVKFMCRGSIPPDPGKFAGYIAIGFAAKPEDISALKTRINLAATDMSDE* |
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