NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1007385

Scaffold Ga0114876_1007385


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1007385 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6643
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F031458Metagenome182N
F059699Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0114876_10073852F031458N/AMPLHYILPHQLPTVWDKAAPLLQKSIDVEPDFITIEQVEYAIRTGKMHLLVWEEPDVGITGAAAVEFIDYPRYRAGHGTLLGGKGVVKPHVLQELLAWMKANGATVAQCWCRDELVPMYKKMGMEETHHVMRIKL*
Ga0114876_10073855F059699AGAAGGMSNPLVRAPRLPNPTPIYDQQYMEALLSSIRLYFNQLDNPGSVLASTQNINNVITTALSFSQPDPVTPGSLRISLPTQADQAAGRLKTGDVYYDTTTFVLKVAP*
Ga0114876_10073859F000220N/AFVYTNQELLIGAYKESRKIPSIAEDRVEDAAAHLFKQSGALVVAVFKVNSMFGTRILYRAYGKNGRDKTNDGLDVGLFTQNAANNADVVKLMANEIPCSEYKSAQSEMGLWYIAKGVAYTCRISVPPEPGRFVGQITVGWATQPEDMDSTRAMLQIAATMLSRSKQ*
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