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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008448 Open in IMG/M |
| Scaffold ID | Ga0114876_1011729 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4930 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F066778 | Metagenome / Metatranscriptome | 126 | Y |
| F072341 | Metagenome / Metatranscriptome | 121 | N |
| F093876 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114876_101172913 | F066778 | N/A | MLRAQLPTKIGERISSIIPMSYNREPNWDKLKPTIDWDEQEEKLAEKLSKYINQNKQTIMNQSVVKSQKFVRDWNGPSGTIYYFDLVLENGEVGQVGVKDMQSPKIAVGATIHYTSEERTGPTGRKTTNFKLQNPNPFNGAGKGIVQSAYTPRKESPEVQNSISRSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKEEDVKVSSPINTKLDEAADDEMPF* |
| Ga0114876_10117292 | F093876 | N/A | MNLFRKKKEVVDLNAKLLPELCSTYIVQWNYTEDIGMEAIYADNVPFMFDARKCVGIQAEVEFRSDGTYYVGQRTIALMQGIDNGIVIDVPYNEFKKHFQELKSNIITNDYIISRG* |
| Ga0114876_10117298 | F072341 | GAG | LAALAHQSFSRSLSAEESNVVEAINSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRTTSIKDWQNAFLLNAVGKEWERVDAYNLFSISFMADVFKRYEEYKAKTWRELNKALILPEAEPREYTPTNPIDDLHADAERYKNGKQTWVEISAPYNCQRLFRQGIYKKSDWMPEVWERMDDLAEQRIAQRWKDANKLRNEGTEKDFINAKKIELSRIVYIDIIKQLNKEKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |