NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1027035

Scaffold Ga0114876_1027035


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1027035 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2868
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020863Metagenome221Y
F023834Metagenome208Y
F046686Metagenome151Y
F068766Metagenome124N
F073256Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0114876_10270351F046686GGAVRAGLTTSQTTPEARLTELLNSLENVVDNLNYKSFTVYDTLVIATENLRVALSNIATEEAGTDTL*
Ga0114876_102703510F073256GGAGGMKLQEVDTIQDLKEWVEENMPGARLTVDSMGDIVIHTGLHSTMGGYLHEREEE*
Ga0114876_102703511F020863GGAGGMQTTIEEVRNLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSKYGSGHWEPRGFSDYLGGTKAEAAHSLRKLIAGIHTGLLIAEKKEDKA*
Ga0114876_10270354F068766GGAGGMTTDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ*
Ga0114876_10270355F023834GAGGMSEPTVDYWRAKAELCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGQDNDN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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