NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1000842

Scaffold Ga0114880_1000842


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1000842 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18956
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F008619Metagenome330Y
F014737Metagenome / Metatranscriptome260Y
F023109Metagenome / Metatranscriptome211Y
F043944Metagenome155Y
F054875Metagenome139Y
F073561Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_100084210F054875AGGAMTKFSAAFGDKYQTNKRNMLTRSFELGGHTFKVRIPLMVESDAIYKKVSQPDEETVEKVYQEITKPLRQFENNQSEEFQFTNDDILVEGRSMREAAKNKAITEARITEFFKLLIPEMEGVTFEDLTYADIEEEFPISVQMQIVEKIGEVISPTYREARGN*
Ga0114880_100084217F002997N/AMAIARFEQITVKNLSFGKSDFGEQSTTQTEWFKTRARVQSVANSLKISEKYRLYQDVVNFVLNYTPNTRTMVRNQNLYSINYNGYDWRIDNIRESDDRMNVVILAYRSDPVTAV*
Ga0114880_10008422F073561GGAMALFSKNVITQVSGFDNPLITGELVYNQRWYWNLTILDSAGLPVNLSTATVTADIARRQISNLIDTRNGLSFDVSNYTPVPTAINLTISNKVNAAGSFTLVIDDTAWGLIASDPQLKIDENNPVCFTGKIKIAFAANTPTPAEDNIIFLMFLVRSDGVTVL*
Ga0114880_10008425F023109N/AMIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIKGRGFIFVDTHMRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTIGGRLWKAFDERAKEMLKAGEVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0114880_10008426F014737GGAMTTINAVTGSQINHAEFVKLTVGNAGTIYTFCNAAAPITVSGITFSNLGALLSVGDVQRDIKATSDDLTISLTGIASANISLILSSDIKGSLVEVWRGFFDANNQIITTPTTQFFKRYQGIINSVAITEDFNTEMRTRIATCSISCSSMRRVLENRLSGIKTNQNSWQFIYAGDTSMNRVSEISNTFFDFGSPPKTNTQASETTVTQTNGYEA*
Ga0114880_10008427F008619AGGGGGMSFQTIFDIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFTIQPHSYLYYPQVRDIIQTIDNKDRQLPEQISFASTNLQWFVKMRGTATAATLNGAPAANTQTLALNSNGTFKAGDFIMVGGYVYKVTADSAGSSVGIHRPLIGTPTSGTTVFLGTACTFNVVAESCPTYTLNPMTDGAFVQWDSAFVFREYIT*
Ga0114880_10008429F043944N/AMIFNGHTLETIEELDDVTLANIQTMYADGMVGNFGILTQIATLTNGVFNYMRVANSPPYKLANILGSAYDYIYPPLSDEHKKAAVNDSLLAFMQQAQGFDKTLFGVKDG*
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