Scaffold Ga0114880_1008794

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114880_1008794

Scaffold Ga0114880_1008794

Overview

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1008794 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5066
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004474	Metagenome / Metatranscriptome	436	Y
F032999	Metagenome	178	Y
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100879411	F032999	N/A	MSTAHYEYWWQRSGRFNMDLFNNYLRAKRDEEFQSNLQSKGCQVDNPTENNSSQQSRGCNQEDGHVASVNH*
Ga0114880_10087943	F004474	GAGG	MNYLLSVENLKKLGLIHNNTDTKILAVAIKRSQDMHIQPALGTPLFKALLNKVETSSWTQDYLDLMNDYVVPCLVAFVDYRAALLLTDKLTNKGAGRITDENQQTLELNQVAELRDQLRKDAYFYKERLIGYLKDDQATKYPEYCDMCSDHCNEYVKKDDTGYKPLNWIQ*
Ga0114880_10087949	F080976	N/A	MKKPGRPKKNLNINIDTKNVDIKITRKDGVTDVKVDTPKVDVELHKDNEGKILKIDSEPVDVTIDKGEVNVDVNEQSGLIGKIAKVLLKRFKK*

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