Scaffold Ga0114880

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1018426 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3283
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3283

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y
F033645	Metagenome / Metatranscriptome	177	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10184262	F025683	GGAG	MVLDLLDPQTLGRLVLVVILMVISAAAGYAKGFKEGKREGMARRKAISRHLSNKVAD*
Ga0114880_10184263	F033645	AGGTGG	MAGFLDNYEDVATRIKRFWETHPSGRIENNIVEFNAEKGFILVQTQIFKEYEDQKPSAIDYAFGNVATYNVQMKKFFVEDTVTSSIGRCIGLLLGTDKRPTRQDMEKVETISTTLAKSTADDYDPWSKKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKTLGGQLIEEAPQCSHGHRIWKQAHEGAPKNWGGYFCTERTKATQCAPNWYVLASDGKWKPQV*
Ga0114880_10184264	F014089	GGA	MSDLVEIIYPQSMTARLLQNGEVIAEYKVEQCDGCAKLLKLDPFGYKIGQAGEKLAWLCGECR*
Ga0114880_10184265	F024931	GAG	VKMTLTREEETVCMLAAVKLQVDTRKFMDNPQRHQKEMGTFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKTKADVGNAIEVRWTKYVAGQLIVHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI*
Ga0114880_10184266	F009503	AGGA	MDKVQFECRKCKKITVQLVHKITDNLPDGVEVIQCTKCEVMGVAQIGDSNANL*
Ga0114880_10184267	F058101	GGTGG	MINPKDIHKATDGKIYSFSGFGGVMNCSQCDDDTMVNEYDRDDGLVVWFCKKCEDRLHL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114880_1018426

Overview

Ecosystem & Geography

Associated Families

Sequences