NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1019586

Scaffold Ga0114880_1019586


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1019586 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3168
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F023592Metagenome / Metatranscriptome209Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_10195864F030767GAGGMATYKTKCRLCARITEHIERVVTDNLPPYVKSLQCVKCGVMGIVMMEDVKDA*
Ga0114880_10195865F029049GAGGMVVCRVSRVAKVVLDRSQEITAHRVGLERTITRNAEIQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFIPSIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYHLLGWMPVHMAKQPRYKHPHQNNYWVPRSSLFEMQYLKRSNYGDI*
Ga0114880_10195867F007029AGGAGMGFLDNYEDVNARIKRFRAEFPSGRLVAHIEHIDIIAGTVLVKAEAYREYEDEKPSAVDYAFGNVSTYPNNMKKWFIEDTITSSYGRCIGLLTPSLEFNSRPTVQDMQKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCAHGTMIWAEGTAKATGKPWAAYKCTEKVRANQCNPYWHVLGSDGKWKPQV*
Ga0114880_10195868F023592AGGMNSLDILIGLFAVGMGFMFMVIGYSIGWRQGHGEGFVRGRAIAHALRDKELI*
Ga0114880_10195869F015095AGGMEQAQLVVGIALGSFTILGLGAGLIRHFVKFYLAELKPDGNGGHNLAGRVERIEKRVDRIYELLIEDRLAK*
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