Scaffold Ga0114880_1029927

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114880_1029927

Scaffold Ga0114880_1029927

Overview

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1029927 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2440
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10299273	F024719	AGCAGG	MTNVVELPNRNKITVVFYEVSDPQNIAVWGGESPREALDWYRRSPTGSKIWVSQYETDEEEAKLVLDLIEITPIVLATITDSIDRWSK*
Ga0114880_10299274	F034906	GGAG	MKNTHRVKAAADQAVRQRNYRRARERALTRLANAFPDIYRAYLEEEKDIDESMGKKWLDIDGNTSLADTRTQ*
Ga0114880_10299275	F022400	AGG	MRRTITESSQRTTLRLVSGGVGESGSAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRRTSSFSRTDITDETP*

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