Scaffold Ga0114880_1045861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114880_1045861

Scaffold Ga0114880_1045861

Overview

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1045861 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1871
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F006139	Metagenome / Metatranscriptome	380	Y
F007579	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10458611	F001872	AGCAGG	MNEWIKQAIAASNNAVFNNGSWGVRDQRGHAGTLSVHATGRAVDLSYRKSERRPQANRKGAVSFIDIVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKP*
Ga0114880_10458613	F006139	AGAAG	MATEVVVSIIGGCFLVLVALIGKIGSDNKKDHGKVHQVLGRIEQKIDHHVENHS*
Ga0114880_10458614	F007579	N/A	MATKAQINAQIGNATRILAPGTTWRYNEPGDGYYCLEWMDDPALQPTEAATMAEATRLANEPQPEA*

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