Scaffold Ga0114880_1051895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114880_1051895

Scaffold Ga0114880_1051895

Overview

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1051895 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1730
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033727	Metagenome	176	Y
F056429	Metagenome	137	N
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10518952	F088280	N/A	MKNLFKECPECDGSGYVTIDLNDTEIPYEQNPVDYDCMLCDGKGEVVMKDEIPYIIEDLNDMIQGMQDRMRIISETIMYCKKGLLPELAEKYLYRLDTCARGLGRLNIYKNKLLKLAE*
Ga0114880_10518953	F033727	AGG	MKQQAKVLSEANELTRLMIKHYLQKHELSLNAFSKLVDIKQPNLHKFLNGSSLSSRSIEKLGEFFSK*
Ga0114880_10518955	F056429	N/A	MVMEDLTIMGYYKNTTREQVVQIKDFKRDKLWYETIRQYEANPITEFCCSTERFKRLYIKTK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.