Scaffold Ga0114880_1095988

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114880_1095988

Scaffold Ga0114880_1095988

Overview

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1095988 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1155
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005745	Metagenome / Metatranscriptome	391	Y
F012013	Metagenome / Metatranscriptome	284	Y
F021535	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10959881	F021535	N/A	AVTVLTKLSNLVPNSLLTLEFEEETGWGGEYEILRGNVTELVEYDNRCRDCDEINTLDYCDNDCGEICDSCHYLGEADLECVAECDTHKVFLDNEHVPEYRRVEA*
Ga0114880_10959883	F005745	AGG	MQPITTELEPHMQKQIDLGSSGLDVIHGHLKVLMLEAEDQLTMARETEEENDYSDAMESMERKYWEGQCDALGHLYELTYQLSFAIAERENRD*
Ga0114880_10959884	F012013	GGA	VTNLDLQEQTRRDDLYNDLNEIVDKITTLPVFPSLLWVWTFDVLRNIYENNQYDDLAENDYVDEAVPSGITLKQIFDKFWEDVDGIGLSMDLGDEIIDETIRDWMRENDFLVSLDDDGWLE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.