NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1137249

Scaffold Ga0114880_1137249


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1137249 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053078Metagenome141N
F078653Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114880_11372491F053078N/ARDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLKVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGVALIATRGDLTASQEWLMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTNAQASDQA*
Ga0114880_11372492F078653GAGGMPKHPTKPDRYAALEAYVAACLPVLNLGNWKVTILTDVAPEDRYADIEPNDQAQTANLRVGNLFWAQKPDEQRLTIVHELIHLHLCRLDQTVDRLEPVLGSAAWAPWAAVYEDVYERATDAIAEILATQVDLPSV*
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