NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114865_1059693

Scaffold Ga0114865_1059693


Overview

Basic Information
Taxon OID3300008459 Open in IMG/M
Scaffold IDGa0114865_1059693 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - July 8, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046190Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0114865_10596931F046190N/AKKFYEIFNKSGYASKDKKKENTADVVLLYNCSISEIQIALKDRKVSGTNESLCEITGTGKKFAMVSLKAGGDSYRTGRVTAMMSSILPDKQQFSGTPSQREKPVEKDPRSVFTGGASVFPQNESINPIFEEIYIGKTLLTEIEFISSLKSSLNRISSKIGDLSAELTKGWSDFIQKIKNTIVKIFGNIEQKCQEDMNYARNQYSAMFNSWDNIEKETGVLSEARESDEELVKMTDSLKKNVAILIQQINRIQPDSLFSAINEKVRLIDNKNLFMVQLTGTTPEDVKEVKNASIKVYNDYFNASTKGDVPLNKGAFRPMNIFNSNIAAIAFYEKFIERFMNVGNEAQIKKDFIQFASQISAEAIFGNNDSLPLVIFNGKTINRMGTKNEFSSGKKLIDANENKNFRLSKFEVSKNKDGTYFVVYLYIIFDIREEEENGKVEVKPFYSAIELRNERGSKFSFKTEIHRSNLSEEDVF*
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