Scaffold Ga0115203_124318

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115203_124318

Scaffold Ga0115203_124318

Overview

Basic Information
Taxon OID	3300008460 Open in IMG/M
Scaffold ID	Ga0115203_124318 Open in IMG/M
Source Dataset Name	Microbial communities of aphids from sagebrush in Onefour, Alberta, CA - Artemisaphis artemisicola CNC#HEM063374
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas, Austin
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1313
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Unclassified → Unclassified → Unclassified → Sagebrush → Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa

Source Dataset Sampling Location
Location Name	Onefour, Alberta, CA
Coordinates	Lat. (^o)	49.115537	Long. (^o)	-110.468757	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060091	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115203_1243181	F060091	N/A	MDELHDLNYKLDLSTESDSDEEMNELLLLYSLSKRNKSIWKSAYMKKRKSHGEFILTSELTNKQFTNYFRLNRNQFNEVLSIVNDKIYSVGCNAQKPIDPDEKLAVFLR*

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