NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115360_10017715

Scaffold Ga0115360_10017715


Overview

Basic Information
Taxon OID3300008465 Open in IMG/M
Scaffold IDGa0115360_10017715 Open in IMG/M
Source Dataset NameSea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.4Long. (o)-93.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091298Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0115360_100177151F091298N/ALRVTSPVQVLEHLSLGEAIQDARVAGLLDLDPLVVSRWLCGEDLRGIYQPIILHDCVLDRLDLERRTFYEMVELVGCRVAVAHFKQAYLYSSPLIEDCVFEGDFHGRGIQSDGRLVIHNTIFTGYADFSEVSLRGMVNLVDVSFPGSTNLLRVLANDSRERLGRQIRLDGCRLHAGDVPAGLDAARLGITPLIEGVEGDLRGAEGQGREFAGREEAGLVHVVAGR*

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