NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0110934_1097594

Scaffold Ga0110934_1097594


Overview

Basic Information
Taxon OID3300008507 Open in IMG/M
Scaffold IDGa0110934_1097594 Open in IMG/M
Source Dataset NameWastewater microbial communities from the domestic sewers in Singapore - Site 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Domestic Sewers

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024268Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0110934_10975942F024268AGGAGGMAIAELYTGTEAISTTEHSLTTDTSGPDADTTDGVFQAFLDVSDMIAGDQLQIRVYEKVRSGDTQRIVYESILTGAQSEPIWVSPSLILMHGWDFTCDALAGTITVNWSIRQVA*
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