NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111033_1054793

Scaffold Ga0111033_1054793


Overview

Basic Information
Taxon OID3300008516 Open in IMG/M
Scaffold IDGa0111033_1054793 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6015
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F032084Metagenome181N
F044193Metagenome155Y
F095342Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0111033_10547931F032084N/AIAKNTEIILIKSLVRRNQTRSKKMRLILSEKDKHIIVTVLGDYATEIDRQRTKTKEDLDTYKRIENIISQVAFGIDKEEKEE*
Ga0111033_105479313F044193AGGAGMIIEEYQENYKNYFMFITVHHSLIEASIHNYWDDDFEYTNRFIDYSPKEVSKILRHYIDNHEEQAIA*
Ga0111033_10547936F013295GGAGMKINDLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES*
Ga0111033_10547938F095342AGGGGGMSKTEMIAEIKSLCNANENNPYCSIYWLADMIKEIVNSPDLKENEDE*
Ga0111033_10547939F008882GAGGMSIKRYNFNKPKINRQELELLNWFLAQTDDNPLINPKALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEQR*
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