NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115192_100040

Scaffold Ga0115192_100040


Overview

Basic Information
Taxon OID3300008521 Open in IMG/M
Scaffold IDGa0115192_100040 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140083
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (82.54%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080166Metagenome115N
F081455Metagenome114N
F092229Metagenome107N
F092232Metagenome107N
F095629Metagenome105N
F095631Metagenome105N
F099453Metagenome103N
F105379Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0115192_100040117F092232GGAGGMNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDANLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0115192_10004014F095631GGAGGMASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSKYCNYTYIDSSTIRVMFDNASYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTERDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0115192_10004040F081455AGGAGMETTINKKDLGFINNLIRDCDDYININHRERMAEKLLRVAIEDSDIPPVEEIGMQNIEIVDSATDAIQQPLVNTDSSIAVNFSQMINKPEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTKTVVRAVRLLNYKMADQNAAMKFGQFVSEFNPECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK*
Ga0115192_10004041F080166N/AVNILANFDNYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR*
Ga0115192_10004044F099453AGGAGGMNRFDVIELAQETLTFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKCIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0115192_10004066F092229AGGAGMNEEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLFMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYHTIKEFKYLPLMNVLTQLTSSNPSGYILNHKLELVKENK*
Ga0115192_10004092F105379AGGGGGMVIQFQLSQSDIESLLSISKLLKCDKILYDRNYINSIIGVGPERSYFQTTSYMIDLDPSINNLLINSLDLKNLSKATDGADITKTNVPVFDWDTLYIKSCMDSLREYQVDSHIIARDDNFHESNCYSELMAGSASTGACRINVDKYLIDIPKSAMPTLKSDHVEAIVYEVPNRNFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0115192_10004097F095629GGAGGMRELIICLCLFGCFGVANASTLVEQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK*
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