Scaffold Ga0115604_1028136

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115604_1028136

Scaffold Ga0115604_1028136

Overview

Basic Information
Taxon OID	3300008614 Open in IMG/M
Scaffold ID	Ga0115604_1028136 Open in IMG/M
Source Dataset Name	Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	615
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga granulosa	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054111	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115604_10281362	F054111	N/A	MNKPLESITHKEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTLKIKWDLDYGLSLETKALSTSDKDLFLNILHKEILSLENQ*

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