Scaffold Ga0115613_1000088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115613_1000088

Scaffold Ga0115613_1000088

Overview

Basic Information
Taxon OID	3300008621 Open in IMG/M
Scaffold ID	Ga0115613_1000088 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	77637
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (18.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068942	Metagenome	124	N
F085820	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115613_100008813	F085820	GAGG	MYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPPNPDHLKQRIVLRLADGTEIEKELSEKGTK*
Ga0115613_100008871	F068942	N/A	MIRKILSLPTLALCFTLGSAFFAGCNEDYIEDTETKVRWSNVKPPQYGDPINITLKAEGETFTTVGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*

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