Scaffold Ga0111492

Basic Information
Taxon OID	3300008660 Open in IMG/M
Scaffold ID	Ga0111492_100001 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008660 Open in IMG/M

Scaffold ID

Ga0111492_100001 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	239650
Total Scaffold Genes	227 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	206 (90.75%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

239650

Total Scaffold Genes

227 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

206 (90.75%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0111492_100001115	F105379	AGGAGG	MVIHFPLNQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLSKITQLEPSGDNPEIAIHKPVVSVFNWDTEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0111492_100001137	F092232	GGAGG	MNSQSKFIAEYNDRNRPKFNDRFFCKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYAEVQKLLIGEETPSISIKDSDLKLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFVDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDENFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPDAVAFDAQLLGQTIAMVARTREFETQLRPALINMEDSCSIYFEEA*
Ga0111492_100001188	F099452	AGCAGG	MGKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYKDIINLDDVSLLTDLRKTDWYEKWFTDDSNNANLIDLSRFNFKTLARFEKEEYLRNVEGYDFEAVTQVDGYSLFDTLIEDKDVELFKLAAENILISHGFFDNTDYNFYDIPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR*
Ga0111492_100001227	F089057	GGAGG	MTNIIPIIAKKYNRKGDTSGSLKSLISDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM*
Ga0111492_10000164	F081455	AGGAG	MDLLKHLNETKLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEWILGNYVDYDSFNKIKESNADIIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLRYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKK*
Ga0111492_10000165	F080166	N/A	MEVTFNSILKRLGNDVKENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS*
Ga0111492_10000168	F099453	AGGAGG	MNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVSGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYRFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIHYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYMIEYMEYGNSKLVIKITQGA*
Ga0111492_1000018	F103435	AGGAG	MKFVFCTEPIYQYYRACVYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPDFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEGKSTVEPLRVWYPFDMNSYTNALE*
Ga0111492_10000190	F092229	AGGAG	MNKEYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFRSTIEELDLATVLQKVTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQAYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRHNPSGYVLDSNLELVKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0111492_100001

Overview

Ecosystem & Geography

Associated Families

Sequences