Scaffold Ga0115430_1052669

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115430_1052669

Scaffold Ga0115430_1052669

Overview

Basic Information
Taxon OID	3300008679 Open in IMG/M
Scaffold ID	Ga0115430_1052669 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	716
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101358	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115430_10526691	F101358	N/A	IPKRQDVPRHQWNVLRSSGQLDEGWIDVEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNLDFTNAYLQRAYGVMMEDGRLQPVADTTHTASQSSATEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVKQ*

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