NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115617_100118

Scaffold Ga0115617_100118


Overview

Basic Information
Taxon OID3300008733 Open in IMG/M
Scaffold IDGa0115617_100118 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 763759525 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83055
Total Scaffold Genes147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (45.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057001Metagenome137Y
F058555Metagenome135N
F083452Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0115617_1001181F058555N/AMKLVYLQQIKNIMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISKSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG*
Ga0115617_10011819F083452N/AMQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGMVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRK*
Ga0115617_10011824F057001AGGMPIQVPRARANLMTNKELTKVQSEVKRASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKEKETVIQLCKEILPRVNNTFCAYKEVEREYYDKQDQDKNVRSTVDKIESIAVLGTDHKRFGYNEPVEFDGGIYYEVFNGPDKRIVKCAIPIKRYTYNLIAKCITYYLTHPKNAR*

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