NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115657_1075625

Scaffold Ga0115657_1075625


Overview

Basic Information
Taxon OID3300008735 Open in IMG/M
Scaffold IDGa0115657_1075625 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004419Metagenome439Y
F099880Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0115657_10756254F004419AGGMAFYRTREGAITASDSFTALGSLYGQSTTASVQLPKQSSSIVGIIATVATDSATNGATTFAVQLSGDGLNNGQETFTIGSQGVDGTPASNGMTNLPFQLDVAIPVTGSNQVSIAGAMDTDVGSCSMAVTLVLA*
Ga0115657_10756255F099880N/AMVEKREAFAPWSLTRKAGVQSATVNSDIEVLQFIQPVLDTGFVDEKGDWKGSKSSEEQFHSFGLDEGIANTGEILAPQATGTTWPLDMTGFDAVYVAIRPTNAGNYAIQAIMAPNDFSFANLNPVNPASLLRGSGSPDNGVFENLFSDSAESLTANVWNIFIIKEALANQKLLQFKITNNSGGSSDIETAFLRMV*
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