NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103640_1002184

Scaffold Ga0103640_1002184


Overview

Basic Information
Taxon OID3300008787 Open in IMG/M
Scaffold IDGa0103640_1002184 Open in IMG/M
Source Dataset NameMicrobial communities from wetland soil in Czech Republic - R3_cDNA
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterFriedrich Schiller University of Jena
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Source Dataset Sampling Location
Location NameCzech Republic
CoordinatesLat. (o)50.14667Long. (o)12.45083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023644Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0103640_10021841F023644N/ALGKYRIEASLRAADSSPARDRMLVTAFYSPATASAFADSIPGSKLLTCHFASQLTGSFARSAFQLHYRIRFAPIPDASLLQARCNLTGSLDGLRLQPPLPFGTFASLRIKAFNWICRLSARLPNPPDLLSLPAAVFYL*
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