NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103696_1010486

Scaffold Ga0103696_1010486


Overview

Basic Information
Taxon OID3300008791 Open in IMG/M
Scaffold IDGa0103696_1010486 Open in IMG/M
Source Dataset NameMicrobial communities from seawater in eastern North Pacific Ocean - P1 free-living McLane
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Nameeastern North Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002392Metatranscriptome564Y

Sequences

Protein IDFamilyRBSSequence
Ga0103696_10104861F002392N/AMLSTVARSTLRQATATRSFAAVASPWGSDTWRYDKNSFLAWCTEATAKKDSAARRELYGMLAMRFGDTDVDKDGKINAAEFDSLCEDIASLPRRFGLAPSWEKEYGTIARRTASRKAMFDMLDLRQGPPRGWIGLEQFVNWATDHLITKVATIDVKADVDYYHIEQYGEHQYLTHLEEAVTNPASRAHASLYEFLLAIFTECDSRSTGVLTFAEFDNLLSRAAEVPRTFGLAPPEASKEIRKKFFDSMEDKQMGGVTFRLLLAWTVEHSKGKIAAQKAGKGYKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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