Scaffold Ga0103700_102065

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103700_102065

Scaffold Ga0103700_102065

Overview

Basic Information
Taxon OID	3300008794 Open in IMG/M
Scaffold ID	Ga0103700_102065 Open in IMG/M
Source Dataset Name	Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	548
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Source Dataset Sampling Location
Location Name	western basin of Lake Erie, USA
Coordinates	Lat. (^o)	41.76	Long. (^o)	-83.31	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022815	Metagenome / Metatranscriptome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103700_1020651	F022815	N/A	HSFRSYKKLLFTNPMHPVQTERYSFSLFNWELALIFCWTNLRYIVIFTIDSYQERFWSASLDIDCNTPICTCVDTENLAETFIGKLLSEEQNQTD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.