Scaffold Ga0115930_1060348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115930_1060348

Scaffold Ga0115930_1060348

Overview

Basic Information
Taxon OID	3300008886 Open in IMG/M
Scaffold ID	Ga0115930_1060348 Open in IMG/M
Source Dataset Name	Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	HPI Heinrich-Pette-Institut
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	837
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated → Microbial Communities Associated With Unicellular Green Alga Micrasterias Crux-Melitensis, Germany - (Mzch: 98)

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)	53.560155	Long. (^o)	9.859606	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015450	Metagenome / Metatranscriptome	254	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115930_10603481	F015450	N/A	TEGLLAETEAKISELNSKLIGQSKQFEQEKLELNSKLEAEVQANSNLKKSLTSLQNKCLNFSNNCIQQLKKIFYSVGASSGKFTPSDEDLPKAFDHIEAEIEELDEVIAGHGDFCAWVASRGTAAAFLKAGCDHGKIVNRPNFTLSPSILDDIPDLARSISNRFVKMIWTKGGREKAGDEARSHLEPVRNHTLCLPLPSSSILTYNNLIHVG*

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