NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103484_1010514

Scaffold Ga0103484_1010514


Overview

Basic Information
Taxon OID3300008919 Open in IMG/M
Scaffold IDGa0103484_1010514 Open in IMG/M
Source Dataset NameMicrobial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NA1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterSodertorn University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Source Dataset Sampling Location
Location NameBarcelona, Spain
CoordinatesLat. (o)41.666Long. (o)2.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058909Metagenome / Metatranscriptome134Y
F103255Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0103484_10105141F103255N/AMKSTADILQELSMYANLNHEDDWYLKDKINELKTRI
Ga0103484_10105143F058909GAGMKLTNTEENVLLVALDHMEEHIMELMEERELRGDMWKERLDACKTIRTKIKK*

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