NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103736_1003772

Scaffold Ga0103736_1003772


Overview

Basic Information
Taxon OID3300008933 Open in IMG/M
Scaffold IDGa0103736_1003772 Open in IMG/M
Source Dataset NameEukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 2B
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1542
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location NameIce edge, McMurdo Sound, Antarctica
CoordinatesLat. (o)-77.36Long. (o)164.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010745Metatranscriptome299Y

Sequences

Protein IDFamilyRBSSequence
Ga0103736_10037722F010745AGGMKNCTPSASQLCTQPQSMMEPVLQDAYPVPTSLYCFSVYTENTGTTKKTEELETLQYQFSKGLSIFACEEHDVFADVEVEVGPGLQTIKVVDTDNDFHFAKRKETGAWVNTGMFSQVWKAIASGGKSSSADWIAKVDADAVFVPSRLSKKLQAQLVPPSGIYLENCKYVEYGYFGNLEVFSKAAFSTLIDNIDDCKADSQINWKVGIKNGKYGPMGEDLFAQACLDKVGVRRIEAFDITTDGACPADRPIDQQKNKKWTPTCAWTATPAMHPFKKVADWIKCHDATMAAFGS*
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